import argparse
import torch
import lib.medzoo as medzoo
def pth2onnx():
args = get_arguments()
input_file = args.input
output_file = args.output
model, optimizer = medzoo.create_model(args)
checkpoint = torch.load(input_file, map_location="cpu")
model.load_state_dict(checkpoint, False)
model.eval()
input_names = ["image"]
output_names = ["class"]
dynamic_axes = {'image': {0: '-1'}, 'class': {0: '-1'}}
dummy_input = torch.randn(1, 4, 64, 64, 64)
torch.onnx.export(model, dummy_input, output_file, input_names = input_names, dynamic_axes = dynamic_axes, output_names = output_names, verbose=False,
opset_version=11)
def get_arguments():
parser = argparse.ArgumentParser()
parser.add_argument('--classes', type=int, default=4)
parser.add_argument('--inChannels', type=int, default=4)
parser.add_argument('--model', type=str, default='UNET3D',
choices=('VNET', 'VNET2', 'UNET3D', 'DENSENET1', 'DENSENET2', 'DENSENET3', 'HYPERDENSENET'))
parser.add_argument('--input', type=str, default='none')
parser.add_argument('--output', type=str, default='none')
args = parser.parse_args()
return args
if __name__ == '__main__':
pth2onnx()