import os
import argparse
import tqdm
import yaml
import sys
sys.path.append('./PraNet')
import numpy as np
from PIL import Image
from tabulate import tabulate
from easydict import EasyDict as ed
filepath = os.path.split(__file__)[0]
repopath = os.path.split(filepath)[0]
sys.path.append(repopath)
from utils.eval_functions import *
def eval(pred_path, gt_path):
datasets = ['Kvasir']
if os.path.isdir(result_path) is False:
os.makedirs(result_path)
method = os.path.split(pred_path)[-1]
Thresholds = np.linspace(1, 0, 256)
headers = ['meanDic', 'meanIoU']
results = []
print('#' * 20, 'Start Evaluation', '#' * 20)
for dataset in tqdm.tqdm(datasets, desc='Expr - ' + method, total=len(datasets), position=0, bar_format='{desc:<30}{percentage:3.0f}%|{bar:50}{r_bar}'):
gt_path = os.path.join(gt_path, dataset, 'masks')
preds = os.listdir(pred_path)
gts = os.listdir(gt_path)
preds.sort()
gts.sort()
threshold_IoU = np.zeros((len(preds), len(Thresholds)))
threshold_Dice = np.zeros((len(preds), len(Thresholds)))
Smeasure = np.zeros(len(preds))
wFmeasure = np.zeros(len(preds))
MAE = np.zeros(len(preds))
for i, sample in tqdm.tqdm(enumerate(zip(preds, gts)), desc=dataset + ' - Evaluation', total=len(preds), position=1, leave=False, bar_format='{desc:<30}{percentage:3.0f}%|{bar:50}{r_bar}'):
pred, gt = sample
assert os.path.splitext(pred)[0] == os.path.splitext(gt)[0]
pred_mask = np.array(Image.open(os.path.join(pred_path, pred)))
gt_mask = np.array(Image.open(os.path.join(gt_path, gt)))
if len(pred_mask.shape) != 2:
pred_mask = pred_mask[:, :, 0]
if len(gt_mask.shape) != 2:
gt_mask = gt_mask[:, :, 0]
assert pred_mask.shape == gt_mask.shape
gt_mask = gt_mask.astype(np.float64) / 255
gt_mask = (gt_mask > 0.5).astype(np.float64)
pred_mask = pred_mask.astype(np.float64) / 255
Smeasure[i] = StructureMeasure(pred_mask, gt_mask)
wFmeasure[i] = original_WFb(pred_mask, gt_mask)
MAE[i] = np.mean(np.abs(gt_mask - pred_mask))
threshold_E = np.zeros(len(Thresholds))
threshold_F = np.zeros(len(Thresholds))
threshold_Pr = np.zeros(len(Thresholds))
threshold_Rec = np.zeros(len(Thresholds))
threshold_Iou = np.zeros(len(Thresholds))
threshold_Spe = np.zeros(len(Thresholds))
threshold_Dic = np.zeros(len(Thresholds))
for j, threshold in enumerate(Thresholds):
threshold_Pr[j], threshold_Rec[j], threshold_Spe[j], threshold_Dic[j], threshold_F[j], threshold_Iou[j] = Fmeasure_calu(pred_mask, gt_mask, threshold)
Bi_pred = np.zeros_like(pred_mask)
Bi_pred[pred_mask >= threshold] = 1
threshold_E[j] = EnhancedMeasure(Bi_pred, gt_mask)
threshold_Dice[i, :] = threshold_Dic
threshold_IoU[i, :] = threshold_Iou
result = []
column_Dic = np.mean(threshold_Dice, axis=0)
meanDic = np.mean(column_Dic)
maxDic = np.max(column_Dic)
column_IoU = np.mean(threshold_IoU, axis=0)
meanIoU = np.mean(column_IoU)
maxIoU = np.max(column_IoU)
result.extend([meanDic, meanIoU])
results.append([dataset, *result])
json = os.path.join(result_path,'result_'+dataset+'.json')
json = open(json,'w')
csv = os.path.join(result_path, 'result_' + dataset + '.csv')
if os.path.isfile(csv) is True:
csv = open(csv, 'a')
else:
csv = open(csv, 'w')
csv.write(', '.join(['method', *headers]) + '\n')
out_str = method + ','
for metric in result:
out_str += '{:.4f}'.format(metric) + ','
out_str += '\n'
csv.write(out_str)
csv.close()
json.write(out_str)
json.close()
print(tabulate(results, headers=['dataset', *headers], floatfmt=".3f"))
print("#"*20, "End Evaluation", "#"*20)
if __name__ == "__main__":
gt_path = sys.argv[1]
pred_path = sys.argv[2]
result_path = sys.argv[3]
eval(pred_path, gt_path)