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[New Image] Add nco 5.4.0-alpha04 for openEuler 24.03-lts-sp4 #3270
jcccx创建于 9 天前
[New Image] Add nco 5.4.0-alpha04 for openEuler 24.03-lts-sp4 #3270
已合并
jcccx创建于 9 天前
从qq_42020325/openeuler-docker-imagesauto/new-image/nco/5.4.0-alpha04-oe2403sp4-e2e-31660957237-a1合入到openeuler/openeuler-docker-imagesmaster
共 10 个文件变更+307-0
MHPC/image-list.yml+1-0
@@ -82,3 +82,4 @@ images:
82 ncl: ncl82 ncl: ncl
83 code_aster: code_aster83 code_aster: code_aster
84 ncview: ncview84 ncview: ncview
85+ nco: nco
AHPC/nco/5.4.0-alpha04/24.03-lts-sp4/Dockerfile+42-0
@@ -0,0 +1,42 @@
1+ARG BASE=openeuler/openeuler:24.03-lts-sp4
2+FROM ${BASE} AS builder
3+ 
4+ARG VERSION=5.4.0-alpha04
5+ 
6+RUN dnf install -y \
7+ gcc gcc-c++ make \
8+ flex bison \
9+ netcdf-devel hdf5-devel \
10+ antlr-C++ antlr-tool gsl-devel \
11+ curl-devel libxml2-devel expat-devel zlib-devel && \
12+ dnf clean all
13+ 
14+RUN curl -fSL --connect-timeout 30 --retry 2 \
15+ -o /tmp/nco.tar.gz \
16+ https://github.com/nco/nco/archive/refs/tags/${VERSION}.tar.gz && \
17+ mkdir -p /tmp/nco-src && \
18+ tar xzf /tmp/nco.tar.gz -C /tmp/nco-src --strip-components=1 && \
19+ cd /tmp/nco-src && \
20+ ./configure --prefix=/usr/local --disable-udunits && \
21+ make -j$(nproc) && \
22+ make install && \
23+ cd / && \
24+ rm -rf /tmp/nco.tar.gz /tmp/nco-src
25+ 
26+FROM ${BASE}
27+ 
28+RUN dnf install -y \
29+ netcdf hdf5 \
30+ gsl antlr-C++ \
31+ libcurl libxml2 expat zlib \
32+ perl && \
33+ dnf clean all
34+ 
35+COPY --from=builder /usr/local /usr/local
36+ 
37+RUN printf '/usr/local/lib\n/usr/local/lib64\n' > /etc/ld.so.conf.d/nco.conf && \
38+ ldconfig
39+ 
40+ENV PATH=/usr/local/bin:$PATH
41+USER root
42+WORKDIR /data
AHPC/nco/README.md+43-0
@@ -0,0 +1,43 @@
1+# Quick reference
2+ 
3+- The official NCO docker image.
4+ 
5+- Maintained by: [openEuler CloudNative SIG](https://gitcode.com/openeuler/cloudnative).
6+ 
7+- Where to get help: [openEuler CloudNative SIG](https://gitcode.com/openeuler/cloudnative), [openEuler](https://gitcode.com/openeuler/community).
8+ 
9+# NCO | openEuler
10+The netCDF Operators (NCO) comprise about a dozen standalone, command-line programs that take [netCDF](http://www.unidata.ucar.edu/netcdf), [HDF](http://hdfgroup.org), and/or [DAP](http://opendap.org) files as input, then operate (e.g., derive new fields, compute statistics, print, hyperslab, manipulate metadata, regrid) and output the results to screen or files in text, binary, or netCDF formats. NCO aids analysis of gridded and unstructured scientific data. The shell-command style of NCO allows users to manipulate and analyze files interactively, or with expressive scripts that avoid some overhead of higher-level programming environments.
11+Learn more at [NCO Homepage](http://nco.sf.net).
12+ 
13+# Supported tags and respective Dockerfile links
14+The tag of each NCO docker image is consist of the version of NCO and the version of basic image. The details are as follows:
15+| Tags | Currently | Architectures |
16+|------|-----------|---------------|
17+|[5.4.0-alpha04-oe2403sp4](https://gitcode.com/openeuler/openeuler-docker-images/blob/master/HPC/nco/5.4.0-alpha04/24.03-lts-sp4/Dockerfile) | NCO 5.4.0-alpha04 on openEuler 24.03-lts-sp4 | amd64, arm64 |
18+ 
19+# Usage
20+- Ensure that you have Docker installed, or are using Docker for Linux containers if on Windows.
21+- Pull the NCO docker image from DockerHub:
22+```
23+ docker pull openeuler/nco:{Tag}
24+```
25+- Print the metadata of a netCDF file, e.g., `in.nc`, located in the current working directory:
26+```
27+ docker run --rm -v $(pwd):/data openeuler/nco:{Tag} ncks -m in.nc
28+```
29+- Copy the variable `lat` from `in.nc` to `out.nc`:
30+```
31+ docker run --rm -v $(pwd):/data openeuler/nco:{Tag} ncks -v lat -O in.nc out.nc
32+```
33+- NCO operators are command-line programs that exit after the operation completes, so the container stops as soon as the operator finishes; results are printed to the terminal or written to output files rather than to container logs.
34+```
35+ docker run --rm -v $(pwd):/data openeuler/nco:{Tag} ncra -O in.nc avg.nc
36+```
37+- To run multiple NCO operators interactively, start a shell inside the container and execute the operators one by one:
38+```
39+ docker run -it --rm -v $(pwd):/data openeuler/nco:{Tag} /bin/bash
40+```
41+ 
42+# Question and answering
43+If you have any questions or want to use some special features, please submit an issue or a pull request on [openeuler-docker-images](https://gitcode.com/openeuler/openeuler-docker-images).
AHPC/nco/doc/image-info.yml+60-0
@@ -0,0 +1,60 @@
1+name: nco
2+category: hpc
3+description: NCO（netCDF Operators，netCDF 操作工具）是一组独立的命令行程序，以 netCDF、HDF 和/或 DAP 文件为输入，进行派生新数据、统计计算、打印、子区域提取、元数据操作和重网格化等操作，并将结果输出到屏幕或文件中。NCO 利用 CF（Climate & Forecast）元数据约定、UDUnits 物理维度转换、OPeNDAP 网络透明访问、HDF 存储特性以及 GSL 科学计算库的多种数学与统计算法，支持网格化与非结构化的科学数据分析。
4+environment: |
5+ 本应用在Docker环境中运行，安装Docker执行如下命令
6+ ```
7+ yum install -y docker
8+ ```
9+tags: |
10+ nco镜像的Tag由其版本信息和基础镜像版本信息组成，详细内容如下
11+ 
12+ | Tag | Currently | Architectures |
13+ |----------|-------------|------------------|
14+ |[5.4.0-alpha04-oe2403sp4](https://gitcode.com/openeuler/openeuler-docker-images/blob/master/HPC/nco/5.4.0-alpha04/24.03-lts-sp4/Dockerfile) | nco 5.4.0-alpha04 on openEuler 24.03-lts-sp4 | amd64, arm64 |
15+ 
16+download: |
17+ 拉取镜像到本地
18+ ```
19+ docker pull openeuler/nco:{Tag}
20+ ```
21+ 
22+usage: |
23+ - 打印当前工作目录下 netCDF 文件 in.nc 的元数据：
24+ ```
25+ docker run --rm -v $(pwd):/data openeuler/nco:{Tag} ncks -m in.nc
26+ ```
27+ 
28+ - 将变量 lat 从 in.nc 复制到 out.nc：
29+ ```
30+ docker run --rm -v $(pwd):/data openeuler/nco:{Tag} ncks -v lat -O in.nc out.nc
31+ ```
32+ 
33+ - 对多个记录文件求平均：
34+ ```
35+ docker run --rm -v $(pwd):/data openeuler/nco:{Tag} ncra -O in.nc avg.nc
36+ ```
37+ 
38+ - 交互式进入容器依次执行多个操作符：
39+ ```
40+ docker run -it --rm -v $(pwd):/data openeuler/nco:{Tag} /bin/bash
41+ ```
42+ 
43+license: 3-Clause BSD License
44+similar_packages:
45+ - ncl: NCAR Command Language，气候和天气数据处理与可视化工具
46+ 
47+dependency:
48+ - netcdf
49+ - hdf5
50+ - gsl
51+ - antlr-C++
52+ - perl
53+ 
54+homepage: http://nco.sf.net
55+upstream:
56+ backend: GitHub
57+ version_url: nco/nco
58+ version_prefix:
59+ version_filter: rc;candidate;beta;pre
60+ version_scheme: RPM
AHPC/nco/doc/picture/logo.png+0-0
AHPC/nco/meta.yml+2-0
@@ -0,0 +1,2 @@
1+5.4.0-alpha04-oe2403sp4:
2+ path: 5.4.0-alpha04/24.03-lts-sp4/Dockerfile
AHPC/nco/results/5.4.0-alpha04/24.03-lts-sp4/aarch64.junit.xml+2-0
@@ -0,0 +1,2 @@
1+<?xml version='1.0' encoding='utf-8'?>
2+<testsuite name="nco-aarch64" tests="1" failures="0" errors="0" time="7.287"><testcase classname="native-image-validation" name="build-runtime-tests" time="7.287" /></testsuite>
AHPC/nco/results/5.4.0-alpha04/24.03-lts-sp4/version_info.json+13-0
@@ -0,0 +1,13 @@
1+{
2+ "Model": "x86_64=oe-image-x86; aarch64=oe-image-arm64",
3+ "architecture": "x86_64,aarch64",
4+ "cpu_cores": 32,
5+ "cpu_model": "x86_64=0; aarch64=0",
6+ "kernel": "x86_64=6.6.0-159.4.3.154.oe2403sp4.x86_64; aarch64=6.6.0-132.0.0.111.oe2403sp3.aarch64",
7+ "numpy_version": "x86_64=not-installed; aarch64=not-installed",
8+ "os": "x86_64=openEuler 24.03 (LTS-SP4); aarch64=openEuler 24.03 (LTS-SP3)",
9+ "python_version": "x86_64=3.11.6; aarch64=3.11.6",
10+ "software_name": "nco",
11+ "software_version": "5.4.0-alpha04",
12+ "test_time": "2026-08-13T03:14:01Z"
13+}
AHPC/nco/results/5.4.0-alpha04/24.03-lts-sp4/x86_64.junit.xml+2-0
@@ -0,0 +1,2 @@
1+<?xml version='1.0' encoding='utf-8'?>
2+<testsuite name="nco-x86_64" tests="1" failures="0" errors="0" time="5.547"><testcase classname="native-image-validation" name="build-runtime-tests" time="5.547" /></testsuite>
AHPC/nco/tests/test.sh+142-0
@@ -0,0 +1,142 @@
1+#!/bin/bash
2+set -euo pipefail
3+ 
4+: "${EXPECTED_VERSION:?EXPECTED_VERSION is required}"
5+ 
6+test_version() {
7+ local output line version="" rc=0
8+ 
9+ if ! command -v ncks >/dev/null 2>&1; then
10+ printf 'FAIL: ncks binary not found in image\n' >&2
11+ return 1
12+ fi
13+ 
14+ if output="$(ncks --version 2>&1)"; then
15+ :
16+ else
17+ rc=$?
18+ printf 'FAIL: ncks --version exited %s:\n%s\n' "${rc}" "${output}" >&2
19+ return 1
20+ fi
21+ 
22+ while IFS= read -r line; do
23+ case "${line}" in
24+ "ncks version "*)
25+ version="${line#ncks version }"
26+ break
27+ ;;
28+ esac
29+ done <<< "${output}"
30+ 
31+ if [[ -z "${version}" ]]; then
32+ printf 'FAIL: "ncks version" line not found in output:\n%s\n' "${output}" >&2
33+ return 1
34+ fi
35+ 
36+ if [[ "${version}" != "${EXPECTED_VERSION}" ]]; then
37+ printf 'FAIL: version mismatch: expected=<%s> actual=<%s>\n' \
38+ "${EXPECTED_VERSION}" "${version}" >&2
39+ return 1
40+ fi
41+ 
42+ printf 'PASS: exact version: %s\n' "${version}"
43+}
44+ 
45+test_core_function() {
46+ local workdir in_cdl in_nc att_nc sq_nc output out_norm val rc=0
47+ 
48+ workdir="$(mktemp -d)"
49+ in_cdl="${workdir}/tst.cdl"
50+ in_nc="${workdir}/in.nc"
51+ att_nc="${workdir}/att.nc"
52+ sq_nc="${workdir}/sq.nc"
53+ 
54+ printf '%s\n' \
55+ 'netcdf tst {' \
56+ 'dimensions:' \
57+ ' time = 4 ;' \
58+ 'variables:' \
59+ ' double time(time) ;' \
60+ ' double temp(time) ;' \
61+ ' temp:units = "K" ;' \
62+ 'data:' \
63+ ' time = 0., 1., 2., 3. ;' \
64+ ' temp = 0., 2., 4., 6. ;' \
65+ '}' > "${in_cdl}"
66+ 
67+ if ncgen -o "${in_nc}" "${in_cdl}" 2>"${workdir}/ncgen.err"; then
68+ :
69+ else
70+ rc=$?
71+ printf 'FAIL: ncgen exited %s: %s\n' "${rc}" "$(cat "${workdir}/ncgen.err")" >&2
72+ return 1
73+ fi
74+ 
75+ if ncatted -O -a long_name,temp,c,c,Temperature "${in_nc}" "${att_nc}" \
76+ 2>"${workdir}/ncatted.err"; then
77+ :
78+ else
79+ rc=$?
80+ printf 'FAIL: ncatted exited %s: %s\n' "${rc}" "$(cat "${workdir}/ncatted.err")" >&2
81+ return 1
82+ fi
83+ 
84+ if output="$(ncks -m "${att_nc}" 2>&1)"; then
85+ :
86+ else
87+ rc=$?
88+ printf 'FAIL: ncks -m exited %s:\n%s\n' "${rc}" "${output}" >&2
89+ return 1
90+ fi
91+ if [[ "${output}" != *'temp:long_name = "Temperature"'* ]]; then
92+ printf 'FAIL: created attribute long_name="Temperature" not found in metadata:\n%s\n' "${output}" >&2
93+ return 1
94+ fi
95+ printf 'PASS: ncatted write + ncks -m readback of attribute\n'
96+ 
97+ if ncap2 -s 'temp_sq=temp*temp' -O "${att_nc}" "${sq_nc}" 2>"${workdir}/ncap2.err"; then
98+ :
99+ else
100+ rc=$?
101+ printf 'FAIL: ncap2 exited %s: %s\n' "${rc}" "$(cat "${workdir}/ncap2.err")" >&2
102+ return 1
103+ fi
104+ 
105+ if output="$(ncks -H -v temp_sq "${sq_nc}" 2>&1)"; then
106+ :
107+ else
108+ rc=$?
109+ printf 'FAIL: ncks -H exited %s:\n%s\n' "${rc}" "${output}" >&2
110+ return 1
111+ fi
112+ out_norm="$(printf '%s' "${output}" | tr -d '[:space:]')"
113+ for val in 'temp_sq=0,4,16,36;'; do
114+ if [[ "${out_norm}" != *"${val}"* ]]; then
115+ printf 'FAIL: computed value <%s> not found in ncks output:\n%s\n' "${val}" "${output}" >&2
116+ return 1
117+ fi
118+ done
119+ printf 'PASS: ncap2 computed temp_sq=temp*temp and ncks read back all values\n'
120+ 
121+ rm -rf "${workdir}"
122+}
123+ 
124+main() {
125+ local failures=0
126+ 
127+ if ! test_version; then
128+ failures=$((failures + 1))
129+ fi
130+ if ! test_core_function; then
131+ failures=$((failures + 1))
132+ fi
133+ 
134+ if (( failures > 0 )); then
135+ printf 'TESTS_FAILED: %s failure(s)\n' "${failures}" >&2
136+ return 1
137+ fi
138+ 
139+ printf 'ALL_TESTS_PASSED\n'
140+}
141+ 
142+main "$@"